There are a few ways to delete mods from Mod Organizer. The first way is to use the “Delete Mods” button in the “Mods” section of the main Mod Organizer screen. The second way is to use the “Remove Mods” button in the “Mods” section of the same screen. The third way is to use the “Modify Mods” button in the “Mods” section of the main Mod Organizer screen.